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1.
Commun Biol ; 7(1): 405, 2024 Apr 03.
Article in English | MEDLINE | ID: mdl-38570628

ABSTRACT

Neuronal oscillations are commonly analyzed with power spectral methods that quantify signal amplitude, but not rhythmicity or 'oscillatoriness' per se. Here we introduce a new approach, the phase-autocorrelation function (pACF), for the direct quantification of rhythmicity. We applied pACF to human intracerebral stereoelectroencephalography (SEEG) and magnetoencephalography (MEG) data and uncovered a spectrally and anatomically fine-grained cortical architecture in the rhythmicity of single- and multi-frequency neuronal oscillations. Evidencing the functional significance of rhythmicity, we found it to be a prerequisite for long-range synchronization in resting-state networks and to be dynamically modulated during event-related processing. We also extended the pACF approach to measure 'burstiness' of oscillatory processes and characterized regions with stable and bursty oscillations. These findings show that rhythmicity is double-dissociable from amplitude and constitutes a functionally relevant and dynamic characteristic of neuronal oscillations.


Subject(s)
Magnetoencephalography , Periodicity , Humans , Magnetoencephalography/methods , Neurons/physiology , Stereotaxic Techniques , Attention/physiology
2.
Epilepsia ; 2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38687176

ABSTRACT

OBJECTIVE: Postsurgical seizure freedom in drug-resistant epilepsy (DRE) patients varies from 30% to 80%, implying that in many cases the current approaches fail to fully map the epileptogenic zone (EZ). We aimed to advance a novel approach to better characterize epileptogenicity and investigate whether the EZ encompasses a broader epileptogenic network (EpiNet) beyond the seizure zone (SZ) that exhibits seizure activity. METHODS: We first used computational modeling to test putative complex systems-driven and systems neuroscience-driven mechanistic biomarkers for epileptogenicity. We then used these biomarkers to extract features from resting-state stereoelectroencephalograms recorded from DRE patients and trained supervised classifiers to localize the SZ against gold standard clinical localization. To further explore the prevalence of pathological features in an extended brain network outside of the clinically identified SZ, we also used unsupervised classification. RESULTS: Supervised SZ classification trained on individual features achieved accuracies of .6-.7 area under the receiver operating characteristic curve (AUC). Combining all criticality and synchrony features further improved the AUC to .85. Unsupervised classification discovered an EpiNet-like cluster of brain regions, in which 51% of brain regions were outside of the SZ. Brain regions in the EpiNet-like cluster engaged in interareal hypersynchrony and locally exhibited high-amplitude bistability and excessive inhibition, which was strikingly similar to the high seizure risk regime revealed by our computational modeling. SIGNIFICANCE: The finding that combining biomarkers improves SZ localization accuracy indicates that the novel mechanistic biomarkers for epileptogenicity employed here yield synergistic information. On the other hand, the discovery of SZ-like brain dynamics outside of the clinically defined SZ provides empirical evidence of an extended pathophysiological EpiNet.

3.
eNeuro ; 11(4)2024 Apr.
Article in English | MEDLINE | ID: mdl-38627063

ABSTRACT

Trace eyeblink conditioning (TEBC) has been widely used to study associative learning in both animals and humans. In this paradigm, conditioned responses (CRs) to conditioned stimuli (CS) serve as a measure for retrieving learned associations between the CS and the unconditioned stimuli (US) within a trial. Memory consolidation, that is, learning over time, can be quantified as an increase in the proportion of CRs across training sessions. However, how hippocampal oscillations differentiate between successful memory retrieval within a session and consolidation across TEBC training sessions remains unknown. To address this question, we recorded local field potentials (LFPs) from the rat dorsal hippocampus during TEBC and investigated hippocampal oscillation dynamics associated with these two functions. We show that transient broadband responses to the CS were correlated with memory consolidation, as indexed by an increase in CRs across TEBC sessions. In contrast, induced alpha (8-10 Hz) and beta (16-20 Hz) band responses were correlated with the successful retrieval of the CS-US association within a session, as indexed by the difference in trials with and without CR.


Subject(s)
Conditioning, Eyelid , Hippocampus , Memory Consolidation , Mental Recall , Rats, Long-Evans , Hippocampus/physiology , Male , Conditioning, Eyelid/physiology , Animals , Memory Consolidation/physiology , Mental Recall/physiology , Association Learning/physiology , Rats , Conditioning, Classical/physiology , Blinking/physiology
4.
Cereb Cortex ; 34(2)2024 01 31.
Article in English | MEDLINE | ID: mdl-38220577

ABSTRACT

Cognitive training can lead to improvements in both task-specific strategies and general capacities, such as visuo-spatial working memory (VSWM). The latter emerge slowly and linearly throughout training, in contrast to strategy where changes typically occur within the first days of training. Changes in strategy and capacity have not been separated in prior neuroimaging studies. Here, we used a within-participants design with dense temporal sampling to capture the time dynamics of neural mechanisms associated with change in capacity. In four participants, neural activity was recorded with magnetoencephalography on seven occasions over two months of visuo-spatial working memory training. During scanning, the participants performed a trained visuo-spatial working memory task, a transfer task, and a control task. First, we extracted an individual visuo-spatial working memory-load-dependent synchronization network for each participant. Next, we identified linear changes over time in the network, congruent with the temporal dynamics of capacity change. Three out of four participants showed a gradual strengthening of alpha synchronization. Strengthening of the same connections was also found in the transfer task but not in the control task. This suggests that cognitive transfer occurs through slow, gradual strengthening of alpha synchronization between cortical regions that are vital for both the trained task and the transfer task.


Subject(s)
Magnetoencephalography , Memory, Short-Term , Humans , Spatial Memory , Cognition
5.
J Neurosci ; 43(45): 7642-7656, 2023 11 08.
Article in English | MEDLINE | ID: mdl-37816599

ABSTRACT

The classic brain criticality hypothesis postulates that the brain benefits from operating near a continuous second-order phase transition. Slow feedback regulation of neuronal activity could, however, lead to a discontinuous first-order transition and thereby bistable activity. Observations of bistability in awake brain activity have nonetheless remained scarce and its functional significance unclear. Moreover, there is no empirical evidence to support the hypothesis that the human brain could flexibly operate near either a first- or second-order phase transition despite such a continuum being common in models. Here, using computational modeling, we found bistable synchronization dynamics to emerge through elevated positive feedback and occur exclusively in a regimen of critical-like dynamics. We then assessed bistability in vivo with resting-state MEG in healthy adults (7 females, 11 males) and stereo-electroencephalography in epilepsy patients (28 females, 36 males). This analysis revealed that a large fraction of the neocortices exhibited varying degrees of bistability in neuronal oscillations from 3 to 200 Hz. In line with our modeling results, the neuronal bistability was positively correlated with classic assessment of brain criticality across narrow-band frequencies. Excessive bistability was predictive of epileptic pathophysiology in the patients, whereas moderate bistability was positively correlated with task performance in the healthy subjects. These empirical findings thus reveal the human brain as a one-of-a-kind complex system that exhibits critical-like dynamics in a continuum between continuous and discontinuous phase transitions.SIGNIFICANCE STATEMENT In the model, while synchrony per se was controlled by connectivity, increasing positive local feedback led to gradually emerging bistable synchrony with scale-free dynamics, suggesting a continuum between second- and first-order phase transitions in synchrony dynamics inside a critical-like regimen. In resting-state MEG and SEEG, bistability of ongoing neuronal oscillations was pervasive across brain areas and frequency bands and was observed only with concurring critical-like dynamics as the modeling predicted. As evidence for functional relevance, moderate bistability was positively correlated with executive functioning in the healthy subjects, and excessive bistability was associated with epileptic pathophysiology. These findings show that critical-like neuronal dynamics in vivo involves both continuous and discontinuous phase transitions in a frequency-, neuroanatomy-, and state-dependent manner.


Subject(s)
Epilepsy , Neocortex , Male , Adult , Female , Humans , Brain/physiology , Electroencephalography/methods , Brain Mapping , Computer Simulation
6.
Nat Commun ; 14(1): 4736, 2023 08 07.
Article in English | MEDLINE | ID: mdl-37550300

ABSTRACT

Neuronal oscillations and their synchronization between brain areas are fundamental for healthy brain function. Yet, synchronization levels exhibit large inter-individual variability that is associated with behavioral variability. We test whether individual synchronization levels are predicted by individual brain states along an extended regime of critical-like dynamics - the Griffiths phase (GP). We use computational modelling to assess how synchronization is dependent on brain criticality indexed by long-range temporal correlations (LRTCs). We analyze LRTCs and synchronization of oscillations from resting-state magnetoencephalography and stereo-electroencephalography data. Synchronization and LRTCs are both positively linearly and quadratically correlated among healthy subjects, while in epileptogenic areas they are negatively linearly correlated. These results show that variability in synchronization levels is explained by the individual position along the GP with healthy brain areas operating in its subcritical and epileptogenic areas in its supercritical side. We suggest that the GP is fundamental for brain function allowing individual variability while retaining functional advantages of criticality.


Subject(s)
Brain , Electroencephalography , Humans , Brain/physiology , Electroencephalography/methods , Magnetoencephalography , Brain Mapping , Neurons/physiology
7.
iScience ; 25(9): 104985, 2022 Sep 16.
Article in English | MEDLINE | ID: mdl-36093050

ABSTRACT

Neuronal oscillations, their inter-areal synchronization, and scale-free dynamics constitute fundamental mechanisms for cognition by regulating communication in neuronal networks. These oscillatory dynamics have large inter-individual variability that is partly heritable. We hypothesized that this variability could be partially explained by genetic polymorphisms in neuromodulatory genes. We recorded resting-state magnetoencephalography (MEG) from 82 healthy participants and investigated whether oscillation dynamics were influenced by genetic polymorphisms in catechol-O-methyltransferase (COMT) Val158Met and brain-derived neurotrophic factor (BDNF) Val66Met. Both COMT and BDNF polymorphisms influenced local oscillation amplitudes and their long-range temporal correlations (LRTCs), while only BDNF polymorphism affected the strength of large-scale synchronization. Our findings demonstrate that COMT and BDNF genetic polymorphisms contribute to inter-individual variability in neuronal oscillation dynamics. Comparison of these results to computational modeling of near-critical synchronization dynamics further suggested that COMT and BDNF polymorphisms influenced local oscillations by modulating the excitation-inhibition balance according to the brain criticality framework.

8.
Neuroimage ; 255: 119203, 2022 07 15.
Article in English | MEDLINE | ID: mdl-35413442

ABSTRACT

Chunking language has been proposed to be vital for comprehension enabling the extraction of meaning from a continuous stream of speech. However, neurocognitive mechanisms of chunking are poorly understood. The present study investigated neural correlates of chunk boundaries intuitively identified by listeners in natural speech drawn from linguistic corpora using magneto- and electroencephalography (MEEG). In a behavioral experiment, subjects marked chunk boundaries in the excerpts intuitively, which revealed highly consistent chunk boundary markings across the subjects. We next recorded brain activity to investigate whether chunk boundaries with high and medium agreement rates elicit distinct evoked responses compared to non-boundaries. Pauses placed at chunk boundaries elicited a closure positive shift with the sources over bilateral auditory cortices. In contrast, pauses placed within a chunk were perceived as interruptions and elicited a biphasic emitted potential with sources located in the bilateral primary and non-primary auditory areas with right-hemispheric dominance, and in the right inferior frontal cortex. Furthermore, pauses placed at stronger boundaries elicited earlier and more prominent activation over the left hemisphere suggesting that brain responses to chunk boundaries of natural speech can be modulated by the relative strength of different linguistic cues, such as syntactic structure and prosody.


Subject(s)
Speech Perception , Speech , Electroencephalography , Humans , Language , Linguistics , Memory , Speech/physiology , Speech Perception/physiology
9.
Mol Psychiatry ; 26(12): 7247-7256, 2021 12.
Article in English | MEDLINE | ID: mdl-34321594

ABSTRACT

Elevated states of brain plasticity typical for critical periods of early postnatal life can be reinstated in the adult brain through interventions, such as antidepressant treatment and environmental enrichment, and induced plasticity may be critical for the antidepressant action. Parvalbumin-positive (PV) interneurons regulate the closure of developmental critical periods and can alternate between high and low plasticity states in response to experience in adulthood. We now show that PV plasticity states and cortical networks are regulated through the activation of TrkB neurotrophin receptors. Visual cortical plasticity induced by fluoxetine, a widely prescribed selective serotonin reuptake inhibitor (SSRI) antidepressant, was lost in mice with reduced expression of TrkB in PV interneurons. Conversely, optogenetic gain-of-function studies revealed that activation of an optically activatable TrkB (optoTrkB) specifically in PV interneurons switches adult cortical networks into a state of elevated plasticity within minutes by decreasing the intrinsic excitability of PV interneurons, recapitulating the effects of fluoxetine. TrkB activation shifted cortical networks towards a low PV configuration, promoting oscillatory synchrony, increased excitatory-inhibitory balance, and ocular dominance plasticity. OptoTrkB activation promotes the phosphorylation of Kv3.1 channels and reduces the expression of Kv3.2 mRNA providing a mechanism for the lower excitability. In addition, decreased expression and puncta of Synaptotagmin2 (Syt2), a presynaptic marker of PV interneurons involved in Ca2+-dependent neurotransmitter release, suggests lower inputs onto pyramidal neurons suppressing feed-forward inhibition. Together, the results provide mechanistic insights into how TrkB activation in PV interneurons orchestrates the activity of cortical networks and mediating antidepressant responses in the adult brain.


Subject(s)
Interneurons , Neuronal Plasticity , Visual Cortex , Animals , Interneurons/metabolism , Mice , Neuronal Plasticity/physiology , Parvalbumins/metabolism , Synaptic Transmission , Synaptotagmin II/metabolism , Visual Cortex/metabolism
10.
Neuroimage Clin ; 31: 102722, 2021.
Article in English | MEDLINE | ID: mdl-34130193

ABSTRACT

Long-Range Temporal Correlations (LRTCs) index the capacity of the brain to optimally process information. Previous research has shown that patients with chronic schizophrenia present altered LRTCs at alpha and beta oscillations. However, it is currently unclear at which stage of schizophrenia aberrant LRTCs emerge. To address this question, we investigated LRTCs in resting-state magnetoencephalographic (MEG) recordings obtained from patients with affective disorders and substance abuse (clinically at low-risk of psychosis, CHR-N), patients at clinical high-risk of psychosis (CHR-P) (n = 115), as well as patients with a first episode (FEP) (n = 25). Matched healthy controls (n = 47) served as comparison group. LRTCs were obtained for frequencies from 4 to 40 Hz and correlated with clinical and neuropsychological data. In addition, we examined the relationship between LRTCs and transition to psychosis in CHR-P participants, and the relationship between LRTC and antipsychotic medication in FEP participants. Our results show that participants from the clinical groups have similar LRTCs to controls. In addition, LRTCs did not correlate with clinical and neurocognitive variables across participants nor did LRTCs predict transition to psychosis. Therefore, impaired LRTCs do not reflect a feature in the clinical trajectory of psychosis. Nevertheless, reduced LRTCs in the beta-band over posterior sensors of medicated FEP participants indicate that altered LRTCs may appear at the onset of the illness. Future studies are needed to elucidate the role of anti-psychotic medication in altered LRTCs.


Subject(s)
Antipsychotic Agents , Psychotic Disorders , Schizophrenia , Antipsychotic Agents/therapeutic use , Brain , Humans , Magnetoencephalography , Psychotic Disorders/drug therapy , Schizophrenia/drug therapy
11.
Sci Rep ; 11(1): 8310, 2021 04 15.
Article in English | MEDLINE | ID: mdl-33859272

ABSTRACT

Amblyopia is a developmental disorder associated with abnormal visual experience during early childhood commonly arising from strabismus and/or anisometropia and leading to dysfunctions in visual cortex and to various visual deficits. The different forms of neuronal activity that are attenuated in amblyopia have been only partially characterized. In electrophysiological recordings of healthy human brain, the presentation of visual stimuli is associated with event-related activity and oscillatory responses. It has remained poorly understood whether these forms of activity are reduced in amblyopia and whether possible dysfunctions would arise from lower- or higher-order visual areas. We recorded neuronal activity with magnetoencephalography (MEG) from anisometropic amblyopic patients and control participants during two visual tasks presented separately for each eye and estimated neuronal activity from source-reconstructed MEG data. We investigated whether event-related and oscillatory responses would be reduced for amblyopia and localized their cortical sources. Oscillation amplitudes and evoked responses were reduced for stimuli presented to the amblyopic eye in higher-order visual areas and in parietal and prefrontal cortices. Importantly, the reduction of oscillation amplitudes but not that of evoked responses was correlated with decreased visual acuity in amblyopia. These results show that attenuated oscillatory responses are correlated with visual deficits in anisometric amblyopia.


Subject(s)
Amblyopia/diagnosis , Amblyopia/physiopathology , Evoked Potentials , Magnetoencephalography/methods , Visual Acuity , Visual Cortex/physiopathology , Adult , Female , Humans , Male , Middle Aged , Photic Stimulation
12.
BMC Psychiatry ; 21(1): 46, 2021 01 18.
Article in English | MEDLINE | ID: mdl-33461506

ABSTRACT

BACKGROUND: Video gaming is a promising intervention for cognitive and social impairment in patients with schizophrenia. A number of gaming interventions have been evaluated in small-scale studies with various patient groups, but studies on patients with schizophrenia remain scarce and rarely include the evaluation of both clinical and neurocognitive outcomes. In this study, we will test the effectiveness of two interventions with gaming elements to improve cognitive and clinical outcomes among persons with schizophrenia. METHODS: The participants will be recruited from different outpatient units (e.g., outpatient psychiatric units, day hospitals, residential care homes). The controlled clinical trial will follow a three-arm parallel-group design: 1) cognitive training (experimental group, CogniFit), 2) entertainment gaming (active control group, SIMS 4), and 3) treatment as usual. The primary outcomes are working memory function at 3-month and 6-month follow-ups. The secondary outcomes are patients' other cognitive and social functioning, the ability to experience pleasure, self-efficacy, and negative symptoms at 3-month and 6-month follow-ups. We will also test the effectiveness of gaming interventions on neurocognitive outcomes (EEG and 3 T MRI plus rs-fMRI) at a 3-month follow-up as an additional secondary outcome. Data will be collected in outpatient psychiatric services in Hong Kong. Participants will have a formal diagnosis of schizophrenia and be between 18 and 60 years old. We aim to have a total of 234 participants, randomly allocated to the three arms. A sub-sample of patients (N = 150) will be recruited to undergo an EEG. For neuroimaging assessment, patients will be randomly allocated to a subset of patients (N=126). We will estimate the efficacy of the interventions on the primary and secondary outcomes based on the intention-to-treat principle. Behavioural and EEG data will be analysed separately. DISCUSSION: The study will characterise benefits of gaming on patients' health and well-being, and contribute towards the development of new treatment approaches for patients with schizophrenia. TRIAL REGISTRATION: ClinicalTrials.gov NCT03133143 . Registered on April 28, 2017.


Subject(s)
Schizophrenia , Video Games , Adolescent , Adult , Cognition , Day Care, Medical , Hong Kong , Humans , Middle Aged , Randomized Controlled Trials as Topic , Schizophrenia/complications , Schizophrenia/therapy , Treatment Outcome , Young Adult
13.
Sci Rep ; 10(1): 9195, 2020 06 08.
Article in English | MEDLINE | ID: mdl-32513931

ABSTRACT

Balance between excitation (E) and inhibition (I) is a key principle for neuronal network organization and information processing. Consistent with this notion, excitation-inhibition imbalances are considered a pathophysiological mechanism in many brain disorders including autism spectrum disorder (ASD). However, methods to measure E/I ratios in human brain networks are lacking. Here, we present a method to quantify a functional E/I ratio (fE/I) from neuronal oscillations, and validate it in healthy subjects and children with ASD. We define structural E/I ratio in an in silico neuronal network, investigate how it relates to power and long-range temporal correlations (LRTC) of the network's activity, and use these relationships to design the fE/I algorithm. Application of this algorithm to the EEGs of healthy adults showed that fE/I is balanced at the population level and is decreased through GABAergic enforcement. In children with ASD, we observed larger fE/I variability and stronger LRTC compared to typically developing children (TDC). Interestingly, visual grading for EEG abnormalities that are thought to reflect E/I imbalances revealed elevated fE/I and LRTC in ASD children with normal EEG compared to TDC or ASD with abnormal EEG. We speculate that our approach will help understand physiological heterogeneity also in other brain disorders.


Subject(s)
Autism Spectrum Disorder/physiopathology , Brain/physiopathology , Cortical Excitability , Inhibition, Psychological , Nerve Net/physiopathology , Adolescent , Adult , Child , Electroencephalography , Female , Humans , Male , Middle Aged , Young Adult
14.
Cereb Cortex ; 30(10): 5293-5308, 2020 09 03.
Article in English | MEDLINE | ID: mdl-32484218

ABSTRACT

The capacity of visual attention determines how many visual objects may be perceived at any moment. This capacity can be investigated with multiple object tracking (MOT) tasks, which have shown that it varies greatly between individuals. The neuronal mechanisms underlying capacity limits have remained poorly understood. Phase synchronization of cortical oscillations coordinates neuronal communication within the fronto-parietal attention network and between the visual regions during endogenous visual attention. We tested a hypothesis that attentional capacity is predicted by the strength of pretarget synchronization within attention-related cortical regions. We recorded cortical activity with magneto- and electroencephalography (M/EEG) while measuring attentional capacity with MOT tasks and identified large-scale synchronized networks from source-reconstructed M/EEG data. Individual attentional capacity was correlated with load-dependent strengthening of theta (3-8 Hz), alpha (8-10 Hz), and gamma-band (30-120 Hz) synchronization that connected the visual cortex with posterior parietal and prefrontal cortices. Individual memory capacity was also preceded by crossfrequency phase-phase and phase-amplitude coupling of alpha oscillation phase with beta and gamma oscillations. Our results show that good attentional capacity is preceded by efficient dynamic functional coupling and decoupling within brain regions and across frequencies, which may enable efficient communication and routing of information between sensory and attentional systems.


Subject(s)
Attention/physiology , Brain/physiology , Cortical Synchronization , Visual Perception/physiology , Adult , Brain Waves , Electroencephalography , Female , Humans , Magnetoencephalography , Male , Parietal Lobe/physiology , Prefrontal Cortex/physiology , Signal Processing, Computer-Assisted , Visual Cortex/physiology , Young Adult
15.
PLoS Biol ; 18(5): e3000685, 2020 05.
Article in English | MEDLINE | ID: mdl-32374723

ABSTRACT

Phase synchronization of neuronal oscillations in specific frequency bands coordinates anatomically distributed neuronal processing and communication. Typically, oscillations and synchronization take place concurrently in many distinct frequencies, which serve separate computational roles in cognitive functions. While within-frequency phase synchronization has been studied extensively, less is known about the mechanisms that govern neuronal processing distributed across frequencies and brain regions. Such integration of processing between frequencies could be achieved via cross-frequency coupling (CFC), either by phase-amplitude coupling (PAC) or by n:m-cross-frequency phase synchrony (CFS). So far, studies have mostly focused on local CFC in individual brain regions, whereas the presence and functional organization of CFC between brain areas have remained largely unknown. We posit that interareal CFC may be essential for large-scale coordination of neuronal activity and investigate here whether genuine CFC networks are present in human resting-state (RS) brain activity. To assess the functional organization of CFC networks, we identified brain-wide CFC networks at mesoscale resolution from stereoelectroencephalography (SEEG) and at macroscale resolution from source-reconstructed magnetoencephalography (MEG) data. We developed a novel, to our knowledge, graph-theoretical method to distinguish genuine CFC from spurious CFC that may arise from nonsinusoidal signals ubiquitous in neuronal activity. We show that genuine interareal CFC is present in human RS activity in both SEEG and MEG data. Both CFS and PAC networks coupled theta and alpha oscillations with higher frequencies in large-scale networks connecting anterior and posterior brain regions. CFS and PAC networks had distinct spectral patterns and opposing distribution of low- and high-frequency network hubs, implying that they constitute distinct CFC mechanisms. The strength of CFS networks was also predictive of cognitive performance in a separate neuropsychological assessment. In conclusion, these results provide evidence for interareal CFS and PAC being 2 distinct mechanisms for coupling oscillations across frequencies in large-scale brain networks.


Subject(s)
Brain/physiology , Connectome , Electroencephalography Phase Synchronization , Brain/diagnostic imaging , Epilepsy/physiopathology , Humans , Magnetic Resonance Imaging , Models, Neurological , Neuropsychological Tests
16.
J Neurosci Methods ; 337: 108654, 2020 05 01.
Article in English | MEDLINE | ID: mdl-32114144

ABSTRACT

BACKGROUND: Reproducibility of research findings has been recently questioned in many fields of science, including psychology and neurosciences. One factor influencing reproducibility is the simultaneous testing of multiple hypotheses, which entails false positive findings unless the analyzed p-values are carefully corrected. While this multiple testing problem is well known and studied, it continues to be both a theoretical and practical problem. NEW METHOD: Here we assess reproducibility in simulated experiments in the context of multiple testing. We consider methods that control either the family-wise error rate (FWER) or false discovery rate (FDR), including techniques based on random field theory (RFT), cluster-mass based permutation testing, and adaptive FDR. Several classical methods are also considered. The performance of these methods is investigated under two different models. RESULTS: We found that permutation testing is the most powerful method among the considered approaches to multiple testing, and that grouping hypotheses based on prior knowledge can improve power. We also found that emphasizing primary and follow-up studies equally produced most reproducible outcomes. COMPARISON WITH EXISTING METHOD(S): We have extended the use of two-group and separate-classes models for analyzing reproducibility and provide a new open-source software "MultiPy" for multiple hypothesis testing. CONCLUSIONS: Our simulations suggest that performing strict corrections for multiple testing is not sufficient to improve reproducibility of neuroimaging experiments. The methods are freely available as a Python toolkit "MultiPy" and we aim this study to help in improving statistical data analysis practices and to assist in conducting power and reproducibility analyses for new experiments.


Subject(s)
Neuroimaging , Software , Computer Simulation , Data Interpretation, Statistical , Reproducibility of Results
17.
Conscious Cogn ; 78: 102863, 2020 02.
Article in English | MEDLINE | ID: mdl-31887533

ABSTRACT

Stimuli may induce only partial consciousness-an intermediate between null and full consciousness-where the presence but not identity of an object can be reported. The differences in the neuronal basis of full and partial consciousness are poorly understood. We investigated if evoked and oscillatory activity could dissociate full from partial conscious perception. We recorded human cortical activity with magnetoencephalography (MEG) during a visual perception task in which stimulus could be either partially or fully perceived. Partial consciousness was associated with an early increase in evoked activity and theta/low-alpha-band oscillations while full consciousness was also associated with late evoked activity and beta-band oscillations. Full from partial consciousness was dissociated by stronger evoked activity and late increase in theta oscillations that were localized to higher-order visual regions and posterior parietal and prefrontal cortices. Our results reveal both evoked activity and theta oscillations dissociate partial and full consciousness.


Subject(s)
Brain Waves/physiology , Cerebral Cortex/physiology , Consciousness/physiology , Evoked Potentials/physiology , Visual Perception/physiology , Adult , Brain Mapping , Female , Humans , Magnetoencephalography , Male , Young Adult
18.
Article in English | MEDLINE | ID: mdl-31071012

ABSTRACT

We review the theory and algorithms of electrophysiological brain connectivity analysis. This tutorial is aimed at providing an introduction to brain functional connectivity from electrophysiological signals, including electroencephalography (EEG), magnetoencephalography (MEG), electrocorticography (ECoG), stereoelectroencephalography (SEEG). Various connectivity estimators are discussed, and algorithms introduced. Important issues for estimating and mapping brain functional connectivity with electrophysiology are discussed.

19.
Brain Connect ; 9(2): 128-143, 2019 03.
Article in English | MEDLINE | ID: mdl-30543117

ABSTRACT

Community structure, or "modularity," is a fundamentally important aspect in the organization of structural and functional brain networks, but their identification with community detection methods is confounded by noisy or missing connections. Although several methods have been used to account for missing data, the performance of these methods has not been compared quantitatively so far. In this study, we compared four different approaches to account for missing connections when identifying modules in binary and weighted networks using both Louvain and Infomap community detection algorithms. The four methods are "zeros," "row-column mean," "common neighbors," and "consensus clustering." Using Lancichinetti-Fortunato-Radicchi benchmark-simulated binary and weighted networks, we find that "zeros," "row-column mean," and "common neighbors" approaches perform well with both Louvain and Infomap, whereas "consensus clustering" performs well with Louvain but not Infomap. A similar pattern of results was observed with empirical networks from stereotactical electroencephalography data, except that "consensus clustering" outperforms other approaches on weighted networks with Louvain. Based on these results, we recommend any of the four methods when using Louvain on binary networks, whereas "consensus clustering" is superior with Louvain clustering of weighted networks. When using Infomap, "zeros" or "common neighbors" should be used for both binary and weighted networks. These findings provide a basis to accounting for noisy or missing connections when identifying modules in brain networks.


Subject(s)
Brain/physiopathology , Connectome/methods , Algorithms , Cluster Analysis , Computer Simulation , Electroencephalography/methods , Humans , Magnetic Resonance Imaging/methods , Nerve Net/physiopathology , Neural Pathways/physiopathology
20.
Trends Neurosci ; 41(10): 729-743, 2018 10.
Article in English | MEDLINE | ID: mdl-30274607

ABSTRACT

Sensorimotor predictions are essential for adaptive behavior. In natural environments, events that demand sensorimotor predictions unfold across many timescales, and corresponding temporal predictions (either explicit or implicit) should therefore emerge in brain dynamics. Neuronal oscillations are scale-specific processes found in several frequency bands. They underlie periodicity in sensorimotor processing and can represent temporal predictions via their phase dynamics. These processes build upon endogenous neural rhythmicity and adapt in response to exogenous timing demands. While much of the research on periodicity in neural processing has focused on subsecond oscillations, these fast-scale rhythms are in fact paralleled by critical-like, scale-free dynamics and fluctuations of brain activity at various timescales, ranging from seconds to hundreds of seconds. In this review, we put forth a framework positing that critical brain dynamics are essential for the role of neuronal oscillations in timing and that cross-frequency coupling flexibly organizes neuronal processing across multiple frequencies.


Subject(s)
Brain/physiology , Interneurons/physiology , Nerve Net/physiology , Neurons/physiology , Animals , Electroencephalography/methods , Humans , Periodicity
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